H2020 NEWCOTIANA Project: Development of multipurpose Nicotiana crops for molecular agriculture using new plant breeding techniques
- Type Project
- Status Filled
- Execution 2018 -2022
- Assigned Budget 7.363.310,00 €
- Scope Europeo
- Autonomous community Comunitat Valenciana; Extremadura; Madrid, Comunidad de
- Main source of financing Horizon 2020
- Project website https://doi.org/10.3030/760331
NEWCOTIANA has advanced beyond the state of the art in sequence-specific nuclease (SSN) technologies and platform optimization. We have developed alternative nucleases and more efficient gene editing methods.
For platform optimization, the new N. benthamiana genome assembly has established a crucial milestone in plant biofactories that will facilitate future breeding strategies.
The expanded collection of regulatory elements represents a crucial advance in the application of intragenesis in breeding.
Nicotiana line prototypes incorporating new and valuable biofactory traits have been obtained and validated at laboratory and open-field scales.
Below are the main impacts resulting from Newcotiana:
- Scientist: The project has developed new resources for NBTs. It has deepened our understanding of gene function in Nicotiana species and the interactions between the metabolome and agronomic behavior.
- Technique: New prototype lines have been generated using TBNs and validated at pilot scale, leading to the selection of elite plant varieties as biofactories. These elite lines show improved production of recombinant proteins (higher quality and/or yield) or value-added metabolites. Biorefinery cascades have been established for the full utilization of tobacco biofactories, meeting the requirements of the circular economy.
- Social: In the EU, around 60,000 tobacco producers and a similar number of indirect jobs are threatened by the decline in tobacco demand. NEWCOTIANA will provide the opportunity to maintain these jobs and create new ones, revitalizing rural areas where tobacco is a traditional crop, as well as the new ones that NEWCOTIANA will add.
The scalability of NEWCOTIANA's biofactory will improve the accessibility of biopharmaceutical products (vaccines, antibodies, and others) whose availability is at risk due to high manufacturing costs and/or long production cycles. Furthermore, NEWCOTIANA aims to provide industry, policymakers, and consumers with experimental evidence to facilitate the decision-making process for the adoption of NBT.
Newcotiana scientists were able to create plants that produce biological products more efficiently and with improved quality, such as human growth factors (hGF) involved in cell regeneration or human secretory antibodies used to combat mucosal pathogens. In parallel, the researchers were able to enrich the composition of tobacco plants with high-value-added small molecules, such as anatabine and squalene, with applications in biomedicine as potential anti-inflammatory agents and vaccine adjuvants.
One of the project's main outcomes was the completion of three rounds of open-field trials (2020–2022) to study the agronomic performance of the new tobacco varieties. The trial results were encouraging, and the traits observed in the greenhouse were confirmed in the field. The enriched lines grown in the field underwent an optimized biorefinery process where, in addition to anatabine and squalene, other high-value chemicals were isolated from the tobacco biomass, leaving the residue for biogas production.
Other important results include (i) the generation of a multi-omics resource for N. benthamiana, including high-quality genome assemblies of two ecotypes, updated genetic annotations, and epigenomic and transposon landscapes; ii) the development of new tools for NBTs, including more efficient CRISPR enzymes, alternative methods for gRNA delivery, optimized methods for gene targeting, and novel intragenic elements; (iii) the generation of biofactorial and non-flowering tobacco lines with improved quality and safety profiles and increased biomass. Dozens of our own plant lines have been created, two of which are targeted for registration, while a patent covering several others is under filing.
Technoeconomic models have been generated for protein products (hGFs, VLP vaccines, and antibodies) and metabolites (anatabine and squalene), and combined production scenarios have been explored, showing the potential financial viability of some of the products. A spin-off company has been founded to exploit the intellectual property derived from the project. There have been ongoing interactions with stakeholders, including policymakers, farmers' associations and industry, and the general public. More than 200 outreach and communication activities have been carried out, including conferences, workshops, 38 scientific publications (zenodo.org/communities/newcotiana), exhibitions, and videos (newcotiana.org/videos). Reports on stakeholder views and public perceptions of NBTs have been produced.
NEWCOTIANA is a research project that uses New Breeding Techniques (NBTs) to develop novel Nicotiana plant varieties that produce high-value end-use chemicals. The plants can be used as biofactories for biopharmaceuticals and other value-added chemicals at farm scale, offering a sustainable solution for current and future manufacturing needs. Species of the genus Nicotiana, specifically N. tabacum (cultivated tobacco) and N. benthamiana (an Australian relative), are among the most widely used plant biofactories due to their favorable attributes, such as metabolic versatility, ease of cultivation, high yield, availability of genetic tools for trait manipulation, and non-food status, which minimizes the potential for contamination of the food supply.
In contrast to its high recognition as a biofactory, traditional tobacco cultivation is in continuous decline in Europe due, among other reasons, to the poor reputation of a crop primarily used for the manufacture of cigarettes and other smoking products. NEWCOTIANA aims to offer an alternative to tobacco producers by breeding competitive Nicotiana biofactory varieties for high-value, smoke-free products. However, to become fully competitive and scalable biofactories, Nicotiana plants need to incorporate unconventional traits such as protein stability or metabolite fortification, which are not accessible to traditional breeding.
Recently, NBTs have emerged that provide unprecedented opportunities for plant biotechnology. The guiding hypothesis of NEWCOTIANA is that the breeding of biofactory tobacco varieties for high-value non-smoking products is possible with the use of NPBTs. Furthermore, NEWCOTIANA's objectives include enhancing public awareness and understanding of NBTs by creating a two-way dialogue between science, on the one hand, and stakeholders, policymakers, and the general public, on the other. NEWCOTIANA's results demonstrate the great potential of NBTs in the development of new crops, specifically industrial crops, in response to current societal and agricultural challenges. The project generated new value-added plant varieties with improved composition. Field trials were conducted to evaluate the agronomic performance of the new varieties. All potential areas of concern raised in the risk assessment analysis were addressed, and no other safety issues emerged from the trials. The project objectives were very positively perceived by stakeholders and well received by the public.
The positive public opinion was a result of the perceived social benefits derived from the project and was facilitated by the crop's non-food status. In light of these results, the NEWCOTIANA consortium believes it is critically necessary to lift the current technology-based restrictions on NBT and replace them with new, product-focused, case-by-case regulations to address grower needs while aligning with current public perceptions.
A group of New Plant Breeding Techniques (NPBTs) has opened unprecedented opportunities in agriculture. These NPBTs are at least as efficient and often more precise than previous traditional and genetic modification techniques, while avoiding the introduction of inherited transgenes from distant species into the plant genome. If properly communicated, NPBTs are expected to gain widespread acceptance, especially when applied to breeding goals considered beneficial to society. One well-perceived goal is Molecular Agriculture, which refers to the use of plants for the production of valuable biomolecules (e.g., biopharmaceuticals).
Cultivated tobacco (Nicotiana tabacum) and its close Australian relative, Nicotiana benthamiana, are the preferred species in Molecular Agriculture due to their favorable characteristics: non-food crops, easy tissue regeneration, high productivity, rich secondary metabolism, and availability of genetic tools. In stark contrast, traditional tobacco cultivation is in severe decline in the EU, causing serious social problems in many rural areas.
NEWCOTIANA seeks to revitalize these areas by developing efficient Nicotiana biofactories for high-value non-smokable products as alternatives to traditional tobacco crops. NEWCOTIANA will develop the most advanced tobacco NPBT toolkit, easily transferable to other plants. This will position the EU at the forefront of breeding innovation. This toolkit will be used to create elite multipurpose Nicotiana varieties improved in specific product traits (quality, stability, and bioproduct yield), along with more general traits such as biomass, resilience, and biosecurity.
The "Newcotiana" varieties will be carefully tested in pre-industrial environments relevant to the production of end-use chemicals, specifically proteins and metabolites for use in health and nutraceuticals. Ethical, social, and legal aspects will be closely monitored, and public and stakeholder engagement will be ensured through innovative scientific communication methodologies.
Plant biotechnology plays an emerging role in the production of small-molecule medicines, biologics (vaccines and therapeutics), and diagnostic reagents. It offers a scalable and low-cost alternative to traditional manufacturing platforms based on microbial and animal cells. Furthermore, it can address the challenges caused by drug distribution and storage, especially in regions of the world with incomplete production chains. New varieties of tobacco plants for drug production Tobacco plants are highly valued as plant biofactories due to their potential as valuable sources of high-value compounds. However, because it is associated with the manufacture of smoking products, tobacco cultivation is in continuous decline in Europe. The EU-funded project Newcotiana (Opens in a new window).
The project aimed to change this perception by developing competitive Nicotiana varieties that can be used for smokeless products, creating a production platform suitable for the EU bioeconomy and bringing sustainability to a traditional crop. The consortium worked with two plant species: Nicotiana tabacum, the commonly cultivated tobacco, and Nicotiana benthamiana, an Australian wild tobacco. To fully exploit the potential of these species as biofactories, scientists had to incorporate specific traits associated with stability, sustainability, and the yield of high-value compounds. Tools to engineer new plant traits Since it was not possible to generate these traits through traditional crop improvement methods, the consortium developed tools to facilitate the accelerated breeding of plant biofactories. “For centuries, we have bred our plants using traditional breeding techniques to produce more and better food, or to resist pathogens, but not to improve biofactories for medicines,” highlights project coordinator Diego Orzáez.
New breeding techniques, including genome editing, improved plants for use in biofactories in record time. The researchers engineered tobacco plants that do not flower in the field but conserve energy to increase their biomass. Furthermore, they engineered these plants to avoid unwanted glycosylation or to reduce protease activity, two traits involved in the quality and functionality of the final protein products obtained from the plant. In several cases, the plants were modified to contain a combination of these special traits. Applications of Engineered Plants In the case of the cultivated tobacco species N. tabacum, the consortium enriched the plant's composition with value-added compounds for pharmaceutical use. One of these compounds was squalene (opens in a new window), a substance currently obtained mainly from unsustainable sources (sharks) and used as an adjuvant in many vaccine formulations. The researchers also produced Anatabine(opens in a new window), a nicotine-related molecule with anti-inflammatory effects, which is being investigated as a possible treatment for various autoimmune diseases.
The engineering of N. benthamiana was slightly different, as this plant was already used by industry to produce recombinant proteins used in cosmetics and pharmaceuticals. The Newcotiana partners shared the N. benthamiana genome sequence to assist the teams in the discovery of new biopharmaceuticals. A Zero-Waste Biorefinery Process Along with efforts to improve the market value of these varieties and perhaps enrich them with additional high-end molecules, the researchers established a pilot zero-waste biorefinery procedure. "The goal is to create a crop and an associated industry that is at least as profitable as smoking tobacco cultivation was," Orzáez emphasizes. "To achieve this, EU legislation must be more flexible and support the engineering of industrial crops."
- AGENCIA ESTATAL CONSEJO SUPERIOR DE INVESTIGACIONES CIENTIFICAS
- IDOASIS 2002 SL
- QUEENSLAND UNIVERSITY OF TECHNOLOGY - QLD QUT
- BIOFACTION KG
- DERMOPARTNERS S.L.
- FRAUNHOFER GESELLSCHAFT ZUR FORDERUNG DER ANGEWANDTEN FORSCHUNG EV
- ASOCIACION EMPRESARIAL DE INVESTIGACION CENTRO TECNOLOGICO NACIONAL AGROALIMENTARIO EXTREMADURA
- SESDERMA SL
- NATAC BIOTECH SL
- AGENZIA NAZIONALE PER LE NUOVE TECNOLOGIE, L'ENERGIA E LO SVILUPPO ECONOMICO SOSTENIBILE
- JOHN INNES CENTRE
- KARLSRUHER INSTITUT FUER TECHNOLOGIE
- NEUTRAL SUPPLY CHAIN LIMITED
- VIB VZW
- Philip Morris Products S.A.
- UNIVERSITAET FUER BODENKULTUR WIEN
- ST GEORGE'S HOSPITAL MEDICAL SCHOOL
- LEIBNIZ-INSTITUT FUR PFLANZENBIOCHEMIE
- THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD
- MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV
- ROYAL HOLLOWAY AND BEDFORD NEW COLLEGE
- CORDIS project factsheet (pdf)
- Collection of functionally characterized intragenic elements
- Report on public perception of TNPN
- A universal transferable GT toolbox for Nicotiana and other Solanaceae species
- White Paper on the Evaluation of NPBT for Future Breeding Practices
- Communication Plan and Gender Action Plan
- Final Communication Report
- Initial Report on Stakeholder Information on NPBTs and Molecular Agriculture
- Collection of editing enzymes with compared efficiencies and predictive model
- Final Dissemination Report
- Final Report on Stakeholder Views and Intended Impacts of the NPTs
- Final Report on Regulatory and Biosecurity Updates
- Initial report on regulatory and biosecurity updates
- Dissemination Plan
- Development of an Apollo web-based genome browser for PacBio N. benthamiana gen…
- Hosting of web tools, dedicated software, and DNA parts documentation
- Collection of audiovisual and web-based communication materials
- PacBio sequencing and assembly of the N. benthaminana genome
- Website of the STATE AGENCY OF THE HIGHER COUNCIL FOR SCIENTIFIC RESEARCH
- QUEENSLAND UNIVERSITY OF TECHNOLOGY website - QLD QUT
- BIOFACTION KG website
- FRAUNHOFER GESELLSCHAFT ZUR FORDERUNG DER ANGEWANDTEN FORSCHUNG EV website
- Website of the BUSINESS RESEARCH ASSOCIATION, NATIONAL AGRO-FOOD TECHNOLOGY CEN…
- Website of AGENZIA NAZIONALE PER LE NUOVE TECNOLOGIE, L'ENERGIA E LO SVILUPPO E…
- JOHN INNES CENTRE website
- KARLSRUHER INSTITUT FUER TECHNOLOGIE website
- VIB VZW website
- UNIVERSITAET FUER BODENKULTUR WIEN website
- ST GEORGE'S HOSPITAL MEDICAL SCHOOL website
- LEIBNIZ-INSTITUT FUR PFLANZENBIOCHEMIE website
- Website of THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD
- MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV website
- ROYAL HOLLOWAY AND BEDFORD NEW COLLEGE website
 
 
 
 
        
   
                         
             
            